2006 Center Publications

Below are the Center publications. Use the options to the left to select the year and limit the type of publication you would like to view.

Peer Reviewed Journal Publications

Bayraktar, B., Banada, P.P., Hirleman, E.D., Bhunia, A.K., Robinson, J.P., Rajwa. B., Bacterial phenotype identification using Zernike moment invariants. Proceedings of the Society for PhotoOptical Instrumentation Engineers. 2006. v. 6080. p. 155-162
Bayraktar, B., Banada, P.P., Hirleman, E.D., Bhunia, A.K., Robinson, J.P., Rajwa, B., Feature extraction from light-scatter patterns of Listeria colonies for identification and classification. Journal of Biomedical Optics. v. 11 (3) p. 034006 (2006).
Burgula, Y., Khali, D., Krishnan, S.S., Cousin, M.A., Gore, J.P., Reuhs, B. L., Mauer, L. J., Detection of E. coli O157:H7 and Salmonella Typhimurium Using Filtration followed by FT-IR Spectroscopy. Journal of Food Protection. (In press).
Chen, W-T., Geng, T., Bhunia, A. K., Ladisch, M. R., "Membrane for Selective Capture of the Microbial Pathogen Listeria monocytogenes," AIChE J., 51(12), 3305-3308 (2005).
Chen, W-T., Hendrickson, R. L., Huang, C-P., Sherman, D., Geng, T., Bhunia, A. K., Ladisch, M. R., "Mechanistic Study of Membrane Concentration and Recovery of Listeria monocytogenes," Biotechnol. Bioeng., 89, 263-273 (2005).
Geng, T., Hahm, B.K., Bhunia, A.K., Selective enrichment media affect the antibody-based detection of stress-exposed Listeria monocytogenes due to differential expression of antibody-reactive antigens identified by protein sequencing. Journal of Food Protection. v. 69. p. 1879-1886 (2006).
Geng, T., Uknalis, J., Tu, S.-I., Bhunia, A.K., Fiber optic biosensor employing Alexa-Fluor conjugated antibody for detection of Escherichia coli O157:H7 from ground beef in four hours. Sensors. v. 6. p. 796-807 (2006)
Hahm, B. K., Bhunia, A. K., Effect of environmental stresses on antibody-based detection of Escherichia coli O157:H7, Salmonella enterica subsp. Enteritidis and Listeria monocytogenes. Journal of Applied Microbiology. 2006. v. 100. p. 1017-1027.
Huang, T. T., Taylor, D. G., Sedlak, M., Mosier, N. S., Ladisch, M. R., "Microfiber-directed Boundary Flow in Press-fit Microdevices Fabricated from Self-adhesive Hydrophobic Surfaces," Analytical Chemistry, 77, 3671-3675 (2005).
Jedlica, S.S., McKenzie, J.L., Leavesley, S.J., Little, K.M., Webster, T.J., Robinson, J.P., Nivens, D.E., Rickus, J.L., Surface features of sol-gel derived silica influence protein conformation and neuronal differentiation. Journal of Materials Chemistry. 2006.(in press).
Kim, G., Morgan, M.T., Ess, D.R., Hahm, B.K., Kothapalli,A., Valadez, A., Bhunia, A.K., Detection of Listeria monocytogenes using an automated fiber-optic biosensor: Raptor. Key Engineering Materials. v. 321-323. p. 1168-1171 (2006).
Kim, H., Kane, M. , Kim, S., Dominguez, W., Applegate, B. Savikhin, S., A molecular beacon DNA microarray system for rapid detection of Escherichia coli O157:H7 that eliminates the risk of a false negative signal. Biosensors and Bioelectronics. 2006. In press.
Kim, K.-P., Jagadeesan, B., Burkholder, K., Jaradat, Z.W., Wampler, J.L., Lathrop, A.A., Morgan, M.T., Bhunia, A.K., Adhesion characteristics of Listeria adhesion protein (LAP) - expressing Escherichia coli to Caco-2 cells and of recombinant LAP to eukaryotic receptor Hsp60 as examined in a surface plasmon resonance sensor. FEMS Microbiology Letters. 2006. v. 256. p. 324-332.
Kim, S., Burgula, Y., Ojanen-Reuhs, T., Cousin, M.A., Reuhs, B.L., Mauer, L.J., Differentiation of crude lipopolysaccharides from Escherichia coli strains using Fourier transform infrared spectroscopy and chemometrics. Journal of Food Science. 2006. v. 71. p. 57-61.
Kim, S., Kim, H., Reuhs, B.L., Mauer, L.J., Differentiation of outer membrane proteins from Salmonella enterica serotypes using Fourier transform infrared spectroscopy and chemometrics. Leters in Applied Microbiology. 2006. v. 42. p. 229-234.
Kim, S. S., Huang, T. T., Fisher, T. S., Ladisch, M. R., "Effects of Carbon Nanotube Structure on Protein Adsorption," IMECE 2005-2008 1395, Proceedings of IMECE 2005, 2005 ASME International Mechanical Engineering Congress and Exposition, Orlando, FL, November 5-100 (2005).
Lathrop. A., Huff, K., Bhunia, A.K., Prevalence of antibodies reactive to pathogenic and nonpathogenic bacteria in preimmune serum of New Zealand white rabbits. Journal of Immunoassay and Immunochemistry. v. 27. p. 351-361 (2006).
Leake, L.L., Advancing rapid microbial testing. Food Technology. v.60. p. 68-72 (2006)
Lim, K. S., Chang, W.J., Koo, Y.M., Bashir, R., "Reliable Fabrication Method of Transferable Micron Scale Metal Pattern for Poly(dimethylsiloxane) Metallization", Lab. Chip. 2006. v. 1. 578 - 580.
Morgan, M.T., Kim, G., Ess, D.R., Kothapalli, A., Hahm, B.K., Bhunia, A.K., Binding inhibition assay using fiber-optic based biosensor for the detection of foodborne pathogens. Key Engineering Materials. v. 321-323. p. 1145-1150 (2006).
Nanduri, V., Kim, G., Morgan, M.T., Ess, D. Hahm, B.-K., Kothapalli, A., Valadez, A.,Geng, T., Bhunia, A.K., Antibody immobilization on waveguides using a flow-through system show improved Listeria monocytogenes detection in an automated fiber optic biosensor: RAPTOR™. Sensors. v. 6. p. 808-822 (2006).
Wang, H.Y., Bhunia, A.K., Lu, C., A microfluidic flow-through device for high throughput electrical lysis of bacterial cells based on continuous DC voltage. Biosensors & Bioelectronics. v. 22 p. 582-588 (2006).
Yang, L., Banada, P., Chatni, M. R., Lim, K, Ladisch, M., Bhunia, A., Bashir, R., "A MultiFunctional Micro-Fluidic System for Dielectrophoretic Concentration Coupled with Immuno-Capture of Low Number of Listeria monocytogenes", Lab on a chip, appeared online June, 2006. DOI: 10.1039/b607061m.
Yang, L., Banada, P.P., Liu, Y.S., Bhunia, A.K., Bashir, R., Conductivity and pH dual detection of growth profile of healthy and stressed Listeria monocytogenes. Biotechnology and Bioengineering. 2005. v. 92. p. 685-693.

Abstracts for major papers/posters presented

Bashir, B., "BioMEMS and Bionanotechnology and Applications to Diagnostics", Plenary Session Monday Oct 31st, Topical Conference "Biomedical Applications of Nanotechnology (Bionanotechnology)", AIChE 2005 Annual Meeting, Oct 31st - Nov 4th, Cincinnati, OH (invited).
Bashir, R., BioMEMS and Bionanotechnology and Applications to Diagnostics, in N.A. Peppas and J.Z. Hilt, eds., "Advances in Bionanotechnology", pp. 1-5, AIChE, New York, NY, 2005 (invited).
Bayraktar, B., Banada, P. P., Hirleman, E. D., Bhunia, A. K., Robinson, J. P., Rajwa, B., Feature Extraction, Identification and Classification of Listeria colonies from light scatter patterns. 14th Annual GLIIFCA Meeting. 2005.
Bayraktar, B., Banada, P.P., Hirleman, E D, Bhunia, A.K., Robinson, J.P., Rajwa, B., Feature extraction from light-scatter patterns of Listeria colonies for identification and classification. Journal of Biomedical Optics 2006. v. 11 paper no. 034006.
Burgula, Y., Cousin, M.A., Applegate, B., Linton, R., Reuhs, B.L., Mauer, L.J., Effects of processing treatments on FT-IR based classification of dead E. coli K12 cells in comparison to live cells. Institute of Food Technologists’ Annual Meeting and Food Expo. 2006. Orlando, FL.
Burgula, Y., Cousin, M.A., Reuhs, B.L., Mauer, L.J., Differentiation of Live vs. Dead cells of E. coli O157:H7 based upon incubation and immunomagnetic separation. Institute of Food Technologists' Annual Meeting and Food Expo. 2006. Orlando, FL.
Burkholder, K.M., Bhunia, A.K., Interaction of Salmonella with cultured intestinal cell lines during heat stress. American Society for Microbiology General Meeting. 2005. p. 445. Abstract No. P-041.
Gomez, R., Bashir, R., "Microscale Impedance-Based Detection of Bacterial Metabolism", in Encyclopedia of Rapid Microbiological Methods, Volume 3, Series Editor, Michael J. Miller, Davis Healthcare International Publishing (DHI. 2006. pp. 333-362.
Huff, K., Banada, P.P., Bayraktar, B, Bae, E, Rajwa, B, Robinson, J.P., Hirleman, E.D. Bhunia, A.K., Detection and Identification of Foodborne Pathogens in Genus and Species Levels Using a Non-invasive Modified Light Scatterometer-BARDOT. American Society for Microbiology Annual meeting. 2006. Abstract no. P-075.
Jagadeesan, B., Burkholder, K., Wampler, J.L., Bhunia, A.K., Interaction of Listeria adhesion protein (LAP) with human Hsp60 on the surface of stressed epithelial cells. American Society for Microbiology General Meeting. 2006. p. 48. Abstract No. B-103.
Kwan S.L., Chang, W.J., Koo, Y.M., Bashir, R., "Embedding Microscale Metal Patterns In Polydimethylsiloxane Substrate" 2005. Ninth International Conference on Miniaturized Systems for Chemistry and Life Sciences (µTAS), Boston Marriott Copley Place, Boston, Massachusetts, USA October 9th - 13th.
Lathrop, A.A., Bhunia, A.K., Expression of Listeria monocytogenes InlB and ActA surface proteins under different growth media. American Society for Microbiology General Meeting. 2005. p. 446, Abstract No. P-046.
Paarlberg, K., Burgula, Y., Cousin, M.A., Reuhs, B.L., Mauer, L.J., 2006. Development of a FT-IR spectral library for select microorganisms. Institute of Food Technologists' Annual Meeting and Food Expo. Orlando, FL. Abstract.
Shen, X., Nivens, D.E., Corvalan, C.M., Predicting analytical response in bioreporter-based sensors for food and agriculture systems. 2006. Institute for Food Technologists, Orlando, FL: Session number 020B.

Thesis/Dissertations

Bae, E., Analysis and characterization of multi-scale scattering : Application to bacterial colonies. Ph.D. Dissertation. Dec 2006. Purdue University. 148 p.
Burgula, Y., "Detection of select foodborne pathogens using FT-IR spectroscopy," Ph.D. Dissertation. 2006. Purdue University.
Chen, W., Biomedical Engineering, "Engineering and Analysis of Immobilized Enzyme System in Microfluidic Device," Ph.D. Dissertation. 2006. Purdue University, 135 p.
Davis, K.D., "Assessment of molecular virulence gene profiling and antibodies for rapid detection of pathogenic Escherichia coli isolates." Ph.D. Dissertation. 2005. Purdue University. 138 p.
Lathrop, A.A., "Development of Listeria monocytogenes specific antibodies using a proteomic/genomics approach and expression of antibody-specific antigens InlB and ActA under different environments. Ph.D. Dissertation." 2005. Purdue University. 142 p.
Nagel, A.C., "Development and analysis of bioreporters in biofilms," Masters Thesis. 2006. Purdue University.
Valadez, A.M., Development of a fiber-optic waveguide biosensor assay for the detection of Salmonella Enteritidis in food. M.S. Thesis 2006. Purdue University. 105 p.

Books and Book Chapters

Amass, S.F., Bhunia, A.K., Chaturvedi, A., Dolk, D., Peeta, S., Atallah, M., Advances in Homeland Security, 2006. Vol. 1, The Science of Homeland Security, Purdue University Press, West Lafayette, IN
Bhunia, A.K., Detection of significant bacterial pathogens and toxins of interest in homeland security. Amass, S.F., Bhunia, A.K., Chaturvedi, A.R., Dolk, D.R., Peeta, S., Atallah, M.J. editors. Purdue University Press, West Lafayette, IN. Advances in Homeland Security Vol. 1. The Science of Homeland Security, 2006. p. 109-149.

Articles in Popular Press

Advancing rapid microbial testing. Food Technology. 60 (9) p. 69-72. (2006)
Pinpointing bacteria. R&D Magazine. 48 (8) p. 68. (2006).

Patents Granted

Bhunia, A.K., Hahm, B.K., Morgan, M.T., Pathogen enrichment detection device and methods of use. 2005. Ref. No. 64303.P1US
Hirleman, E.D., Guo, S., Bhunia, A.K., Bae, E. System and method for rapid detection and characterization of bacterial colonies using forward light scattering. 2005. Ref. No. 64142.00.US
Ladisch et al, Cell Concentration and Pathogen Recovery, 11/081 378 (2005).

Invited Lectures and Seminars

Bhunia, A.K., Bacterial Pathogen Detection: Micro/Nano-Technology Approaches. Indian Institute of Chemical Biology, Calcutta, West Bengal, India. Dec 21, 2005.
Bhunia, A.K., Listeria monocytogenes Pathogenesis: Intestinal Phase of Infection. Indian Institute of Technology, Guwahati, Assam, India. Dec 5, 2005.
Bhunia, A.K., Microbiology Meets Nanotechnology. Indian Institute of Technology, Guwahati, Assam, India. Dec 5, 2005.
Bhunia, A.K., Optical immunosensors and cell-based detection for Listeria monocytogenes. International Rapid Methods Workshop, Kansas State University, Manhattan, KS. July, 2006.
Bhunia, A.K., Pathogenesis of Listeria monocytogenes and its detection strategies using micro/nano sensors. Department of Biology, Ball State University, Muncie, Indiana. Nov 4, 2005.
Cheng, Z.-Y., Electroactive polymers for artificial muscles and biosensors. 3M Science and Engineering Faculty Day, St. Paul, Minnesota, USA, June 21, 2006.
Cheng, Z.-Y., Chin, B.A., A radically new approach to rapidly detect biological threat agent. SPIE Defense & Security, April, Orlando, Florida, USA, 2006.
Fu, L., Li, S., Zhang, K., Cheng, Z.-Y., A Novel Method for Monitoring Biological Quality of Surface Waters. 20th Annual Alabama Water Resource Conference, Orange Beach, Alabama USA, Sept. 7-8, 2006. - This poster was selected as the Best Student Poster (1st Place).
Ladisch, M. R., "Microfluidic Characterization of Press Fit Microdevices," University of Akron, Akron, OH (October 21, 2005).
Ladisch, M. R., "Rapid Prototyping of Microfluidic Separation Platforms," North Carolina State University (February 3, 2006).
Li, S., Fu, L., Wang, C., Lea, S., Engelhard, M., Arey, B., Cheng, Z.-Y., Microstructure and composition of Fe-B Nanobars. Materials Research Society Fall Meeting, Boston, Massachusetts, USA, 2006.
Li, S.Q., Orona, L., Fu, L.L., Cheng, Z.-Y., Development of amorphous Fe-B nanorods and nanoarray as magnetostrictive acoustic resonator for sensor applications. US ONR Workshop on Transduction Materials and Devices, State College, Pennsylvania, May 10, 2006.