2007 Center Publications

Below are the Center publications. Use the options to the left to select the year and limit the type of publication you would like to view.

Peer Reviewed Journal Publications

Bae, E., Banada, P.P., Huff, K., Bhunia, A.K., Robinson, J.P., Hirleman, E.D., Bio-physical modeling of forward scattering from bacterial colonies using scalar diffraction theory. Applied Optics. v. 46 (17) p. 3639-3648 (2007).
Banada, P.P., Guo, S., Bayraktar, B., Bae, E., Rajwa, B., Robinson, J.P., Hirleman, E.D., Bhunia, A.K., Optical forward scattering for colony identification and differentiation of Listeria species. Biosensors and Bioelectronics. v. 22 (8). p.1664-1671 (2007).
Banerjee, P., Morgan, M.T., Rickus, J.L., Ragheb, K., Corvalan, C., Robinson, J.P., Bhunia, A.K., Hybridoma Ped-2E9 cells cultured under modified conditions can sensitively detect Listeria monocytogenes and Bacillus cereus. Applied Microbiology and Biotechnology. v. 73. p. 1423-1434 (2007).
Bhattacharya, S., Jang, J., Yang, L., Akin, D., Bashir, R., BioMEMS and nanotechnology based approaches for rapid detection of biological entities. Journal of Rapid Methods and Automation in Microbiology. 2007. v. 15. p. 1-32.
Bhunia, A.K., Banada, P.P., Banerjee, P., Valadez, A., Hirleman, E.D., Light scattering, fiber optic and cell-based sensors for sensitive detection of foodborne pathogens. Journal of Rapid Methods and Automation in Microbiology. v. 15 (2) p.121-145 (2007).
Burgula, Y., Khali, D., Kim, S., Cousin, M.A., Gore, J. P., Reuhs, B.L., Mauer, L.J., Review of mid-IR Fourier-transform infrared (FT-IR) spectroscopy applications for bacterial detection. Journal of Rapid Methods and Automation in Microbiology. 2007. v. 15. p. 146-175.
Chapple, C., Ladisch, M., Meilan, R., Loosening Lignin's grip on biofuel production. Nature Biotechnology. 2007. v. 25 (7). p. 746-748.
Jedlica, S.S., Little, K.M., Nivens, D.E., Zemlyanov, D., Rickus, J.L., Peptide ormosils as cellular substrates. Journal of Materials Chemistry. 2007. v. 17. p. 5058-5067.
Kim, G., Morgan, M.T., Ess, D.R., Hahm, B.K., Kothapalli, A., Bhunia, A.K., An automated fiber-optic biosensor based binding inhibition assay for the detection of Listeria monocytogenes. Food Science and Biotechnology. 2007. v. 16(3). p. 337-342.
Kim, K.P., Hahm, B.K., Bhunia, A.K., The 2-cys peroxiredoxin deficient Listeria monocytogenes displays impaired growth and survival in the presence of hydrogen peroxide in vitro but not in mouse organs. Current Microbiology. v. 54. p. 382-387 (2007).
Liu, Y-S., Walter, T. M., Chang, W-J., Lim, K-S., Yang, L., Lee, S-W., Aronson, A., Bashir, R., Electrical detection of germination of model Bacillus Anthracis spores in microfluidic biochips. Lab Chip. 2007. v. 7. p. 603-610.
Nanduri, V., Bhunia, A.K., Tu, S.-I., Paoli, G.C., Brewster, J.D., SPR biosensor for the detection of L. monocytogenes using phage displayed antibody. Biosensors & Bioelectronics. 2007 (in press)
Sage, L., Detecting pathogens on produce. Analytical Chemistry. pp 7-9. (2007)
Sun, L., Yu, C., Irudayaraj, J., Surface enhanced raman scattering based nonfluorescent probes for multiplex DNA detection. Analytical Chemistry, (accelerated publication, available online, Apr 27, 2007).
Vermerris, W., Saballos, A., Ejeta, G., Mosier, N. S., Ladisch, M. R., Carpita, N. C., Molecular breeding to enhance ethanol production from corn and sorghum stover. Crop Science Society of America. 2007. v. 47(S3). p. S142-S153.
Ximenes, E. A., Dien, B. S., Ladisch, M. R., Mosier, N., Cotta, M. A., Li, X. L., Enzyme production by industrially relevant fungi cultured on feed co-product from corn dry grind ethanol plants. Applied Biochemistry and Biotechnology. 2007. v. 136-140 (1-12). p. 171-183.
Yu, C., Irudayaraj, J., Multiplex biosensor using gold nanorods. Analytical Chemistry. 2007. v. 79(2) p. 572-579.
Yu, C., Irudayaraj, J., Sensitivity and selectivity limits of multiplex nanoSPR biosensor assays. Biophysical Journal. 2007. v. 93(9) p.1-9.
Zeng, M. N., Mosier, S., Huang, C-P., Sherman, D. M., Ladisch, M. R., Microscopic examination of changes of plant cell structure in corn stover due to cellulase activity and hot water pretreatment. Biotechnology Bioengineerg. 2007. v. 97(2). p. 265-278.

Abstracts for major papers/posters presented

Banada, P.P., Bernas, T., Robinson, J.P., Bhunia, A. K., Proteomic analysis of cytotoxic factors from Bacillus cereus. American Society for Microbiology General Meeting. Toronto, ON. May 21-25, 2007.
Banada, P.P., Bernas, T., Robinson, J.P., Bhunia, A.K., Proteomic analysis and identification of cytotoxic factors from Bacillus cereus. P-097, 107th American Society for Microbiology (ASM) Annual Meeting. May 21-25, Toronto, Canada pp 206., 2007.
Bashir, R., BioMEMS and bionanotechnology: Integration of life sciences and engineering at the micro and nanoscale. The Knowledge Foundation's 10th Annual Conference, BioDetection Technologies. Atlanta, GA. June 14-15, 2007.
Bhattacharya, S., Salamat, S., Banada, P., Liu, Y., Morisette, D., Bhunia, A. K., Akin, D., Bashir, R., Integrated detection of microorganisms in a microfluidic biochip. Biomedical Engineering Society (BMES) Annual Meeting. Los Angeles, CA. September 27-29, 2007.
Gross, B. D., Reed, T.S., Stoklosa, A.D., Schroeder, D.L., Nagel, A.C., Co, B., Nivens, D.E., Remote sensing of agricultural contaminants using biosensor networks over TCP/IP. 233rd Annual Meeting of the American Chemical Society. Presented April 23, 2007.
Hahm, B.K., Kim, H., Bhunia, A.K., Enrichment and detection of Escherichia coli O157:H7, Salmonella Typhimurium and Listeria monocytogenes using a sample preparation device, PEDD (Pathogen Enrichment and Detection Device). 107th American Society for Microbiology (ASM) Annual Meeting. May 21-25, Toronto, Canada. 2007.
Irudayaraj, J., No-glow tags for Raman Spectroscopy. Analytical Chemistry News. June 1, 2007 (page 3961).
Koo, O. K., Jagadeesan, B., Burkholder, K., Bhunia, A.K., Targeted capture of pathogenic Listeria using a Listeria Adhesion Protein (LAP) specific mammalian cell receptor, Hsp60 for detection of bacteria on biosensor platforms. Institute of Food Technologists Annual Meeting. Chicago, IL. July 28-August 1, 2007.
Liu, Y., Banada, P., Bhattacharya, S., Akin, D., Bhunia, A. K., Bashir, R., Electrical characterization of DNA molecules in fluids using impedance measurements. Biomedical Engineering Society (BMES) Annual Meeting, Los Angeles, CA. September 27-29, 2007.
Nagel, A.C., Mauer, L.J. , Stoklosa, A.D., Franklin, M.J., Nivens, D.E., Quantification of cellular biomass and extracellular alginate from Pseudomonas aeruginosa biofilms using fourier transform infrared (FT-IR) spectroscopy. American Society for Microbiology, 107th Annual General Meeting. 2007.
Nagel, A.C., Schroeder, D.L., Gross, B.D., Co, B., Nivens, D.E., Development of an arsenic sensing biosensor as a model for detection of chemical threat agents in food products. Institute of Food Technologist National Meeting. Chicago, IL. 2007.
Schroeder, D.L. , Nagel, A.C., Gross, B.D., Reed, T.S., Nivens, D.E., Bioreporter-based chemical sensor of arsenic in agricultural samples. 233rd Annual Meeting of the American Chemical Society. Presented April 23, 2007.
Suanthie, Y., Woloshuk, C. P., Multiplex real-time PCR assay to detect and quantify three genera of mycotoxigenic fungi. Phytopathology. 2007. 2008. v.98. Abstract p. S205.
Valadez, A.M., Tu, S.-I. Tu, Bhunia, A.K., Development of a fiber-optic waveguide biosensor assay for the detection of Salmonella Enteritidis from poultry products. Institute of Food Technologist. Poster Abstract No. 098-31, 2007.
Walker, S., Heinemann, P., Catchmark, J., Debroy., C., Irudayaraj, J., Detection of Escheria Coli using a novel scanning imaging surface Plasmon resonance biosensor. The 12th Annual Meeting of the Institute of Biological Engineering March 29-April 1, 2007.

Thesis/Dissertations

Kim, H.A., Selective enrichment medium for simultaneous growth and detection of Escherichia coli O157:H7, Listeria monocytogenes, and Salmonella Enteritidis from food. 2007. Purdue University. p. 126
Wang, H.Y., Microfluidic electroporation and cell arrays. Ph.D. Dissertation. 2007. Purdue University. 166 p.

Books and Book Chapters

Geng, T., Bhunia, A.K., 2007. Optical biosensors in foodborne pathogen detection. Smart Biosensor Technology. CRC Press, (Editors: Knopf and Bassi), Taylor and Francis group, Boca Raton, FL p. 505-519.
Irudayaraj, J., Christoph, R., Nondestructive Sensing for Food Quality. IFT Press, Blackwell Publishing Professional. Ames, IA. 2007.
Kizil, R. and Irudayaraj, J., FT-Raman spectroscopy for food and biomaterial characterization. Irudayaraj, J., Christoph, R. editors. IFT Press, Blackwell Publishing Professional, Ames, IA. Nondestructive Sensing for Food Quality. 2007.
Kizil, R., Irudayaraj, J., 2007. FT-Raman spectroscopy for food and biomaterial characterization. Nondestructive sensing for food quality. IFT Press, (Editors. Irudayaraj and Christoph), Blackwell Publishing Professional, Ames, IA 50014.
Wang, H.Y., Banada, P.P., Bhunia, A.K., Lu, C., Rapid electrical lysis of bacterial cells in a microfluidic device. Floriano, P.N., editor. Humana Press, Totowa, NJ. Methods in Molecular Biology vol. 385: Microchip-based Assay Systems: Methods and Applications. 2007. p. 23-35.
Yu, C., Irudayaraj, J., Sensitivity and selectivity limits of multiplex nanoSPR biosensor assays. Nagarajan, R. editor. American Chemical Society Books, American Chemical Society. Nanoparticles: Synthesis, Passivation, Stabilization, and Functionalization. 2007.

Articles in Popular Press

Detecting pathogens on produce. Analytical Chemistry. p. 7-9. (2007).

Patents Granted

64803.P1.US - Multiplex Biosensor Using Gold Nanostructures. Provisional patent application filed on February 23, 2007.
Multiplex biosensor using gold nanostructures. 2007. U.S. Provisional Patent Application 64803.P1.US.
Gomez, R., Bashir, R., Bhunia, A. K., Ladisch, M., Robinson, J. P., Biosensor and Related Method. 2007. U.S. Patent 7,306,924 US.