2008 Center Publications

Below are the Center publications. Use the options to the left to select the year and limit the type of publication you would like to view.

Peer Reviewed Journal Publications

Bae, E., Banada, P.P., Huff, K., Bhunia, A.K., Robinson, J.P., Hirleman, E.D., Analysis of time-resolved scattering from macroscale bacterial colonies. Journal of Biomedical Optics. 2008. v. 13 (1). p. 014010.
Banerjee, P., Lenz, D., Robinson, J.P., Rickus, J.L., Bhunia, A.K., A novel and simple cell-based detection system with collagen-encapsulated B-lymphocyte cell line as a biosensor for rapid detection of pathogens and toxins. Laboratory Investigation. 2008. v. 88. p. 196-206.
Bao, N., Jagadeesan, B., Bhunia, A.K., Yao, Y., Lu, C., Quantification of bacterial cells based on autofluorescence on a microfluidic platform. Journal of Chromatography. 2008. v. 1181. p. 153-158.
Bao, N., Lu, C., A microfluidic device for physical trapping and electrical lysis of bacterial cells. Applied Physics Letters. 2008. v. 92. p. 214103.
Bao, N., Wang, J., Lu, C., Recent advances in electric analysis of cells in microfluidic systems. Analytical and Bioanalytical Chemistry. 2008. v. 391. p. 933-942.
Bhattacharya, S., Salamat, S., Morisette, D., Banada, P., Akin, D., Liu, Y-S., Bhunia, A. K., Ladisch, M., Bashir, R., PCR based-detection in a micro-fabricated platform. Lab on a Chip. 2008. v. 8. p. 1130-1136.
Bhunia, A.K., Biosensors and bio-based methods for the separation and detection of foodborne pathogens. Advances in Food and Nutrition Research. 2008. v. 54. p. 1-44.
Kim, H., Bhunia, A.K., SEL, a selective enrichment broth for simultaneous growth of Salmonella enterica, Escherichia coli O157:H7, and Listeria monocytogenes. Applied and Environmental Microbiology. 2008. v. 74 (15). p. 4853-4866.
Kim, Y., Hendrickson, R., Mosier, N. S., Ladisch, M. R., Bals, B., Balan, V., Dale, B.E., Enzyme hydrolysis and ethanol fermentation of liquid hot water and afex pretreated distillers' grains at high-solids loadings. Bioresource Technology. 2008. v. 99(12). p. 5206-5215.
Kim, Y., Mosier, N., Ladisch, M. R., Process simulation of modified dry grind ethanol plant with recycle of pretreated and enzymatically hydrolyzed distillers' grains. Bioresource Technology. 2008. v. 99(12). p. 5177-5192.
Kim, Y., Mosier, N. S., Hendrickson, R., Ezeji, T., Blaschek, H., Dien, B., Cotta, M., Dale, B., Ladisch M. R., Composition of corn dry-grind ethanol by-products: DDGS, 3 wet cake, and thin stillage. Bioresource Technology. 2008. v. 99(12). p. 5165-5176.
Ladisch, M., Dale, B., Tyner, W., Mosier, N.S., Kim, Y., Cotta, M., Dien, B.S., Blaschek, H., Laurenas, E., Shanks, B., Verkade, J., Schell, C., Petersen, G., Cellulose conversion in dry grind ethanol plants. Bioresource Technology. 2008. v. 99(12). p. 5157-5159.
Ladisch, M. R., Dale, D., Distillers grains: On the pathway to cellulose conversion. Bioresource Technology. 2008. v. 99(12) p. 5155-5156.
Lathrop, A.L., Banada, P.P., Bhunia, A.K., Differential expression of InlB and ActA in Listeria monocytogenes in selective and nonselective enrichment broths. Journal of Applied Microbiology. 2008. v. 104. p. 627-639.
Liu, Y-S., Banada, P.P., Bhattacharya, S., Bhunia, A.K., Bashir, R., Electrical characterization of DNA molecules in solution using impedance measurements. Applied Physics Letters. 2008. v. 92. p. 143902.
Stewart, P.S., Franklin, M.J., Physiological heterogeneity in biofilms. Nature Reviews Microbiology. 2008. v. 6 p.199-210.
Wang, C., Irudayaraj, J., Gold nanorod probes detects multiple pathogens. Small - a Nanotechnology Journal. 2008. (In Press).
Yang, L., Banda, P.P., Bhunia, A.K., Bashir, R., Effects of dielectrophoresis on growth, viability, and immuno-reactivity of Listeria monocytogenes. Journal of Biological Engineering. (2008) v. 2(6). p.
Yang, L., Bashir, R., Electrical/electrochemical impedance for rapid detection of foodborne pathogenic bacteria. Biotechnology Progress, Biotechnology Advances. 2008. v. 26. p. 135-150.

Abstracts for major papers/posters presented

Bashir, R., Interfacing Silicon and Biology at the Micro and Nanoscale. NSF USA-EU Workshop on Bionanotechnology. Ispra, Italy. May, 2008.
Bashir, R., Interfacing silicon and biology at the micro and nanoscale. University of Cincinnati, Nanomedicine Center Seminar Series. Cincinnati, OH. February 18, 2008.
Bashir, R., Ahmad, I., BioMEMS and bionanotechnology for development of miniaturized instruments. Symposium on Center for Analytical Instrumentation Development. West Lafayette, IN. June 18, 2008.
Bashir, R., Bhunia, A., Ladisch, M., Engineering of biosystems for the detection of Listeria monocytogenes in foods-development of a biochip. Manhattan, KS. June 18, 2008.
Burkholder, K. M., Kim, K.-P., Hahm, B.-K., Mishra, K., Medina-Maldonado, S., Bhunia, A. K., Anaerobic environment increases surface localization of Listeria Adhesion Protein (LAP) and promotes infectivity of Listeria monocytogenes. American Society for Microbiology General Meeting. Boston, MA. June 1-5, 2008.
Jagadeesan, B., Raizman, E., Nanduri, V., Bannantine, J., Bhunia, A.K., Rapid label free sero-diagnosis of Johne's disease using surface plasmon resonance biosensor. American Society for Microbiology General Meeting. Boston, MA. June 1-5, 2008.
Kim, K., Bhunia, A.K., Performance evaluation of a multiplex selective enrichment broth, SEL, by proteomic analysis and immunoassay. Institute of Food Technologist Annual Meeting. New Orleans, LA. June 29-July 2, 2008.
Koo, O. K., Shuaib, S., Ladisch, M. R., Bashir, R., Bhunia, A. K., Targeted capture of pathogenic Listeria using a Listeria Adhesion Protein (LAP) specific mammalian cell receptor, Hsp60 for detection of bacteria on biosensor platforms. American Society for Microbiology General Meeting. Boston, MA. June 1-5, 2008.
Lenz, A.P., Williamson, K., Franklin M.J., Localized gene expression along vertical transects of Pseudomonas aeruginosa biofilms. American Society for Microbiology Meeting on Microbial Biofilms. 2008.
Lenz, A.P., Williamson K., Franklin M.J., Quantification of cell numbers and riboscome content of Pseudomonas aeruginosa biofilms using laser microdissection and qRT-PCR. General Meeting of the American Society for Microbiology. 2008.
Mishra, K., Burkholder, K. M., Medina-Maldonado, S., Bhunia, A. K., Cloning, genomic organization and expression of SecA2 Gene in Listeria species. American Society for Microbiology General Meeting. Boston, MA. June 1-5, 2008.
Morandage, J. S., Woloshuk, C. P., Cousin, M. A., Enzymatic release of DNA from Fusarium spores for use in real-time PCR. International Association for Food Protection. 2008. Abstract p.
Morandage, J. S., Woloshuk, C. P., Cousin, M. A., Release of DNA from Fusarium spores for use in real-time PCR. Institute of Food Technologists. 2008. Abstract p.
Ngamwongsatit, P., Banada, P.P., Bhunia, A.K., Panbangred, W., Study on correlation between enterotoxin genes and cytotoxicity in Bacillus cereus isolated from patient, food and soil in Thailand. American Society for Microbiology General Meeting. Boston, MA. June 1-5, 2008.
Schroeder, D.L., Nagel, A.C., Gross, B.D., Reed, T.S., Ausloos, D.D., Nivens, D.E., Quantitative detection of arsenic in food using a bioreporter-based chemical sensor. Institute of Food Technologist National Meeting. New Orleans, LA. 2008.
Sun, L., Irudayaraj, J., Confocal raman based nanoarray platform for multiplex detection using non-fluorescent tags. The 12th Annual Meeting of the Institute of Biological Engineering. March 29-April 1.
Woloshuk, C.P., Suanthie, Y., Real time PCR assay applications for distillers grain. Midwest Section Meeting of the Association of Analytical Communities International. 2008. Abstract p. 18.


Banerjee, P., Mammalian cell based biosensor for rapid screening of pathogenic bacteria and toxins. Ph.D. Dissertation. 2008. Purdue University. 191 p.
Huff, K., The light scatterometer BARDOT as a noninvasive sensor for the identification of common foodborne bacteria. M.S. Thesis. 2008. Purdue University. 172 p.
Liu, Y.-S., Impedance spectroscopy based micro-scale biosensing. Ph.D. Thesis. 2008. Purdue University.
Shin, J., Biobattery. Ph.D. Thesis. 2008. Purdue University.

Books and Book Chapters

Banada, P.P., Bhunia, A.K., Antibodies and immunoassays for detection of bacterial pathogens. Zourob, M., Turner, P.F., editors. Cambridge University, Manchester, UK. Section II. Biorecognition. New Technologies for Bacterial Pathogen Detection.
Bao, N., Lu, C., Microfluidics-based lysis of bacteria and spores for detection and analysis. Zourob, M., Elwary, S., Turner, A., editors. Springer, New York, NY. Principles of Bacterial Detection: Biosensors, Recognition Receptors and Microsystems. 2008. p. 783-796.
Bhunia, A.K., Microbial Foodborne Pathogens: Mechanisms and Pathogenesis. First Edition, Springer, New York, NY. 2008. 276 p.
Kim, Y., Hendrickson, R., Mosier, N. S., Ladisch, M. R., Liquid hot water pretreatment of cellulosic biomass. Methods in Molecular Biology. (In press).
Kizil, R., Irudayaraj, J., FT-Raman spectroscopy for food and biomaterial characterization. Elsevier Publications Ltd. In Modern Techniques for Food Authentication. (In Press)
Ray, B., Bhunia, A.K., Fundamental Food Microbiology. 4th Edition. CRC Press, Taylor and Francis group, Boca Raton, FL. 2008. 491 p.
Schwietzke, S., Kim, Y., Ximenes, E., Mosier, N., Ladisch, M., Ethanol production from maize. Brian Larkins, editor. Biomass for Maize Biotechnology. (In press).
Zeng, M., Ladisch, M. R., Breaking barriers to cellulosic ethanol: understanding interactions between modifications of plant cells, enzymes and pretreatments. Plant Biotechnology Reviews. (In press).

Patents Granted

Purdue Research Foundation. Identity profiling of cell surface markers. 2008. U.S. Provisional Patent Application 64892.P2.US.
Hirleman, E.D., Guo, S., Bae, E., Bhunia, A.K., System and method for rapid detection and characterization of bacterial colonies using forward light scattering. U.S. Patent 64142.00.